X-Git-Url: https://git.plutz.net/?p=confetti;a=blobdiff_plain;f=pdiread.sh;h=08fbaec3fb373c2fbb6cdde7974caaa520b849e3;hp=8118318d3d4bdd4e2793d468c037b28b5006588f;hb=a6e3da877a73be739ac96b12d9cde2190b24a423;hpb=5ab459e666f2526f671fe222cd1646a4e6798b27 diff --git a/pdiread.sh b/pdiread.sh index 8118318..08fbaec 100755 --- a/pdiread.sh +++ b/pdiread.sh @@ -26,13 +26,23 @@ include_pdi="$0" BR=' ' +unescape() { + local unescape='s;(^(\\\\)*|[^\\](\\\\)*)\\n;\1\n;g; s;\\(.);\1;g' + if [ $# -eq 0 ]; then + sed -E "$unescape" + else + printf %s "$*" \ + | sed -E "$unescape" + fi +} + pdi_load() { # normalise PDI file for processing with pdi_* functions # functions in this library can only be applied to normalised data # Usage example: # data="$(pdi_load file.vcf)" - sed -En ' + sed -srn ' # === Read entire file into buffer === :X $bY; N; bX; :Y s;^.*$;\n&\n;; @@ -100,7 +110,7 @@ pdi_load() { # === Update obsolete LABEL property === s;\nLABEL((\;[A-Za-z0-9-]+|\;[A-Za-z0-9-]+=([^;,:"]+|"[^"]+")(,[^;,:"]+|,"[^"]+")*)*):(.*)\n;\nADR\1\;LABEL="\5":\n;g; - p;' "$1" + p;' "$@" } pdi_count(){